PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G170800.1.p
Common NameGLYMA_10G170800, LOC100802536
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 422aa    MW: 46185 Da    PI: 8.1312
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G170800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.16e-133965127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                         ++++ C++++rtG C++G++C+F+H+p
  Glyma.10G170800.1.p 39 PGEPDCSYYMRTGLCRFGATCRFNHPP 65
                         5789*********************97 PP

2zf-CCCH39.31.1e-1286110327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++C+++++tGtCk+G++CkF+H++
  Glyma.10G170800.1.p  86 QPECQYYLKTGTCKFGATCKFHHPK 110
                          799********************96 PP

3zf-CCCH38.61.8e-12132156327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++C +++rtG+Ck+G++CkF+H++
  Glyma.10G170800.1.p 132 EPECTYYLRTGQCKFGNTCKFHHPQ 156
                          799********************97 PP

4zf-CCCH391.4e-12282308127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C+f+++tG Ck+G+ C+F+H++
  Glyma.10G170800.1.p 282 PGQPECQFYMKTGDCKFGAVCRFHHPQ 308
                          5789*********************97 PP

5zf-CCCH38.12.5e-12328354127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++lC f++r+G+Ck+G++CkF H++
  Glyma.10G170800.1.p 328 PGEPLCVFYSRYGICKFGPSCKFDHPM 354
                          589**********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.3E-73865IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.9253866IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-104065IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-54366IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-44464IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.1483111IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-683110IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-1086110IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-687112IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-589110IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-6129156IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.939129157IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6132157IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-10132156IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4135155IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-6281308IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.605281309IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-9283308IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-6285311IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-5287309IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7327354IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.432327355IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-9329354IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5330355IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4332353IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MENNNNNHNL IVPNPQDSLW MMNLRTGETM DSGSYPERPG EPDCSYYMRT GLCRFGATCR  60
FNHPPNRKLA IATARMIGEF PERIGQPECQ YYLKTGTCKF GATCKFHHPK DQAGIAGRVA  120
LNILGYPLRP NEPECTYYLR TGQCKFGNTC KFHHPQPSNM MLSLRGSPVY PTVHSPTTPG  180
QQSYAGGTYI PSPRWQGPSS YAPLILPQGV VSVPGWSAYS GQMGSISTSD SPQQAMRNGQ  240
TYGTSRQGEL AGSQGAYSQF RSGTVPVGFY TLQRENIFPE RPGQPECQFY MKTGDCKFGA  300
VCRFHHPQER LVPAPNCVLS PIGLPLRPGE PLCVFYSRYG ICKFGPSCKF DHPMEIFSHN  360
ISASPSADAP SRHLLGSSSG TAALNLSSEG LVESSSAKPR RLSLSETRQI PSGDDDIDDD  420
G*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.432120.0cotyledon| epicotyl| flower| hypocotyl| leaf| meristem| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1468021e-178BT146802.1 Lotus japonicus clone JCVI-FLLj-23L7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003536159.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLI1LBV80.0I1LBV8_SOYBN; Uncharacterized protein
STRINGGLYMA10G31370.40.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Representative plantOGRP12471750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-175zinc finger protein 1